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@refgenie

Refgenie

Standardized assets for reference genomes

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  1. refgenie refgenie Public

    Reference genome resource manager

    Python 74 8

  2. refgenieserver refgenieserver Public

    Serves a web interface and RESTful API for reference genome assets.

    Python 12 3

  3. refgenconf refgenconf Public

    A Python object for standardized reference genome assets.

    Python 2 7

  4. refgenie_nfcore refgenie_nfcore Public

    Nextflow plugin for refgenie compatibility

    Python 8

  5. deploy_guide deploy_guide Public

    Information on deployed refgenieserver instances.

    1

  6. refgenomes.databio.org refgenomes.databio.org Public

    Primary refgenieserver instance

    Python 1

Repositories

Showing 10 of 20 repositories
  • refgenie-docs Public

    Documentation for refgenie components

    refgenie/refgenie-docs’s past year of commit activity
    Python 0 0 1 0 Updated Apr 12, 2026
  • recipes Public

    recipes & asset classes definitions

    refgenie/recipes’s past year of commit activity
    0 GPL-3.0 1 1 1 Updated Apr 12, 2026
  • refget Public

    Python tools for identification and distribution of reference sequences and sequence collections

    refgenie/refget’s past year of commit activity
    Python 10 BSD-2-Clause 1 4 13 Updated Apr 11, 2026
  • refgenieserver Public

    Serves a web interface and RESTful API for reference genome assets.

    refgenie/refgenieserver’s past year of commit activity
    Python 12 BSD-2-Clause 3 2 0 Updated Apr 11, 2026
  • refgenconf Public

    A Python object for standardized reference genome assets.

    refgenie/refgenconf’s past year of commit activity
    Python 2 BSD-2-Clause 7 1 0 Updated Apr 1, 2026
  • refgenie Public

    Reference genome resource manager

    refgenie/refgenie’s past year of commit activity
    Python 74 BSD-2-Clause 8 26 0 Updated Mar 6, 2026
  • seqcolapi Public archive
    refgenie/seqcolapi’s past year of commit activity
    Python 0 BSD-2-Clause 2 0 0 Updated Feb 19, 2026
  • refgenie-ui Public

    UI demo/placeholder for new refgenie interface

    refgenie/refgenie-ui’s past year of commit activity
    TypeScript 0 0 0 0 Updated Oct 14, 2025
  • refgenomes.databio.org Public

    Primary refgenieserver instance

    refgenie/refgenomes.databio.org’s past year of commit activity
    Python 1 0 4 0 Updated Aug 12, 2025
  • seqcol Public archive

    Implementation of sequence collections

    refgenie/seqcol’s past year of commit activity
    Jupyter Notebook 1 BSD-2-Clause 0 0 0 Updated Feb 14, 2024
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