Repositories list

• SingleCellProjections.jl

  Public
  Analysis of Single Cell Expression data in Julia

  Julia

  •

  Other

  •44 forks•2626 stars•44 issues•22 pull requests•Updated Apr 15, 2026Apr 15, 2026

• BioStructures.jl

  Public
  A Julia package to read, write and manipulate macromolecular structures

  bioinformaticsbiologystructural-biology+ 5

  bioinformaticsbiologystructural-biologypdbjuliaprotein-structurestructural-bioinformaticsbiojulia

  Julia

  •

  Other

  •2424 forks•106106 stars•99 issues•22 pull requests•Updated Apr 13, 2026Apr 13, 2026

• MemoryViews.jl

  Public
  Simple, low-level views into memory in Julia

  Julia

  •

  MIT License

  •11 fork•2424 stars•00 issues•00 pull requests•Updated Apr 12, 2026Apr 12, 2026

• BufferIO.jl

  Public
  The buffer is the interface

  Julia

  •

  MIT License

  •00 forks•2020 stars•66 issues•11 pull request•Updated Apr 8, 2026Apr 8, 2026

• BioTutorials

  Public
  Tutorial Notebooks of BioJulia

  julia

  julia

  SCSS

  •88 forks•3737 stars•99 issues•11 pull request•Updated Mar 25, 2026Mar 25, 2026

• BioAlignments.jl

  Public
  Sequence alignment tools

  bam-filesbioinformaticsbiology+ 7

  bam-filesbioinformaticsbiologyhigh-throughput-sequencingdna-sequencessequence-alignmentsequence-analysisbiojuliasmith-waterman-alignmentsam-files

  Julia

  •

  MIT License

  •2626 forks•6565 stars•2222 issues•22 pull requests•Updated Mar 18, 2026Mar 18, 2026

• Automa.jl

  Public
  A julia code generator for regular expressions

  juliaregular-expression

  juliaregular-expression

  Julia

  •

  Other

  •1616 forks•198198 stars•99 issues•11 pull request•Updated Mar 12, 2026Mar 12, 2026

• CIGARStrings.jl

  Public
  Read and write Concise Idiosyncratic Gapped Alignment Reports.

  Julia

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• XAMAuxData.jl

  Public
  Read auxiliary data fields in SAM, GFA and PAF formats

  Julia

  •

  MIT License

  •00 forks•33 stars•00 issues•11 pull request•Updated Feb 20, 2026Feb 20, 2026

• BGZFLib.jl

  Public
  Read and write BGZF files

  Julia

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• PairwiseMappingFormat.jl

  Public
  Parser for the PAF format in bioinformatics

  Julia

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• biojulia.github.io

  Public
  Julia

  •

  MIT License

  •55 forks•66 stars•55 issues•11 pull request•Updated Jan 29, 2026Jan 29, 2026

• posts

  Public
  Blog posts for the biojulia website

  bioinformaticsbiologyjulia

  bioinformaticsbiologyjulia

  Julia

  •55 forks•77 stars•66 issues•11 pull request•Updated Jan 15, 2026Jan 15, 2026

• BioJuliaTemplate.jl

  Public
  Template package for BioJulia

  Julia

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Jan 13, 2026Jan 13, 2026

• BioSequences.jl

  Public
  Biological sequences for the julia language

  bioinformaticsbiologybiological-sequences+ 1

  bioinformaticsbiologybiological-sequencesbiojulia

  Julia

  •

  MIT License

  •5151 forks•161161 stars•1919 issues•77 pull requests•Updated Jan 8, 2026Jan 8, 2026

• Kmers.jl

  Public
  Efficient types and methods for K-mer biosequences

  Julia

  •

  MIT License

  •77 forks•3131 stars•33 issues•22 pull requests•Updated Jan 5, 2026Jan 5, 2026

• BED.jl

  Public
  bioinformaticsbed-format

  bioinformaticsbed-format

  Julia

  •

  MIT License

  •77 forks•66 stars•33 issues•33 pull requests•Updated Dec 28, 2025Dec 28, 2025

• BioMakie.jl

  Public
  Plotting and interface tools for biology.

  Julia

  •

  MIT License

  •66 forks•6969 stars•44 issues•1313 pull requests•Updated Dec 11, 2025Dec 11, 2025

• FormatSpecimens.jl

  Public
  Biological file format specimens for testing packages, and functions to assist in testing.

  Julia

  •

  Other

  •33 forks•1515 stars•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• GenomicAnnotations.jl

  Public
  bioinformaticsgff3biology+ 4

  bioinformaticsgff3biologyjuliagenbankgenesgenome-annotation

  Julia

  •

  MIT License

  •44 forks•1818 stars•11 issue•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• KWayMerges.jl

  Public
  Implementation of k-way merge algorithms in Julia

  Julia

  •

  MIT License

  •00 forks•44 stars•11 issue•11 pull request•Updated Jul 11, 2025Jul 11, 2025

• TwoBit.jl

  Public
  Support for working with 2Bit formatted sequence data files

  Julia

  •

  MIT License

  •33 forks•1111 stars•22 issues•11 pull request•Updated Jul 2, 2025Jul 2, 2025

• Indexes.jl

  Public
  tabix

  tabix

  Julia

  •

  MIT License

  •44 forks•33 stars•22 issues•44 pull requests•Updated Apr 27, 2025Apr 27, 2025

• XAM.jl

  Public
  Parse and process SAM and BAM formatted files

  bam-filesbioinformaticssam+ 5

  bam-filesbioinformaticssambambiojuliasam-filessam-formatbam-format

  Julia

  •

  MIT License

  •1414 forks•2929 stars•2323 issues•55 pull requests•Updated Apr 26, 2025Apr 26, 2025

• BioSymbols.jl

  Public
  Nucleic and amino acid primitive types

  bioinformaticsbiologycomputational-biology+ 5

  bioinformaticsbiologycomputational-biologybiological-data-analysisamino-acidsnucleotidesnucleic-acidsbiojulia

  Julia

  •

  MIT License

  •1414 forks•3434 stars•33 issues•11 pull request•Updated Apr 25, 2025Apr 25, 2025

• ProteinSecondaryStructures.jl

  Public
  Wrapper to protein secondary structure calculation packages

  Julia

  •

  MIT License

  •11 fork•1313 stars•00 issues•00 pull requests•Updated Apr 3, 2025Apr 3, 2025

• NCBIBlast.jl

  Public
  Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/

  Julia

  •

  MIT License

  •22 forks•66 stars•11 issue•11 pull request•Updated Mar 10, 2025Mar 10, 2025

• BioMarkovChains.jl

  Public
  Representing biological sequences as Markov chains

  bioinformaticsbiologyjulia+ 3

  bioinformaticsbiologyjuliamarkov-chaindnajulialang

  Julia

  •

  MIT License

  •22 forks•99 stars•00 issues•11 pull request•Updated Dec 9, 2024Dec 9, 2024

• PopGen.jl

  Public
  Population Genetics in Julia

  snpsgenomicsgenetics+ 4

  snpsgenomicsgeneticsstructurepopgenfstmicrosatellites

  Julia

  •

  MIT License

  •1717 forks•5353 stars•44 issues•11 pull request•Updated Nov 26, 2024Nov 26, 2024

• PopGenCore.jl

  Public
  Core utilities for PopGen.jl, including the PopData type and file IO

  Julia

  •

  MIT License

  •22 forks•66 stars•33 issues•00 pull requests•Updated Nov 26, 2024Nov 26, 2024